- Basic information
- CohesinDB ID: CDBP00419427
- Locus: chr21-39224700-39225233
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 54%,
"4_Tx": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, ZSCAN5D, POU5F1, TOP2A, SOX2, TEAD4, ZNF600, PAF1, DUX4, FOXA1, ZNF770, SMARCC1, ERG, RELA, PRDM1, ARNT, GATA3, ZEB2, NRIP1, SUPT5H, GATA1, ZNF121, ESR1, GRHL2, NCOR2, PHOX2B, CTCF, RBM22, NUP98-HOXA9, AR, PAX3-FOXO1, EGLN2, ZNF211, POU2F3, HSF1, NCOR1, BRD4, PRDM6, NCOA2, KMT2B, ZZZ3, PDX1
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,BRWD1,SH3BGR,LCA5L,B3GALT5,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 42
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:39200000-39225000~~chr21:39300000-39325000,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39700000-39725000,