- Basic information
- CohesinDB ID: CDBP00419432
- Locus: chr21-39244018-39244348
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 64%,
"4_Tx": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZFX, ZBTB48, FOXA1, PBX2, MLL4, ERG, RELA, ZNF384, NEUROD1, MYC, GATA4, PRDM1, SP140, GLYR1, SUPT5H, ZNF143, GATA1, CEBPB, CREB1, TP53, ESR1, CTCF, RBM22, GATA2, BRD4, PRDM6
- Target gene symbol (double-evidenced CRMs): B3GALT5,GET1-SH3BGR,BRWD1,LCA5L,SH3BGR,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39700000-39725000,