- Basic information
- CohesinDB ID: CDBP00419437
- Locus: chr21-39255116-39255423
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Data sourse: GSE67783, GSE111913, ENCSR153HNT, GSE86191
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Cell type: K-562, RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 55%,
"5_TxWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, POU2F2, CHD8, CEBPA, RUNX1T1, ZFX, XBP1, WT1, ZBTB48, ZSCAN5A, FOXA1, ZNF770, HOXB13, ERG, RELA, NOTCH1, NEUROD1, MYC, CDK6, OSR2, SP140, ARNT, HIF1A, OTX2, NKX2-1, GLYR1, MECOM, GABPA, SUPT5H, ZNF143, MED1, CEBPB, NCOA3, MYB, EZH2, LMO2, CTCF, RBM22, TCF12, SPI1, AR, MXD3, TCF3, PRDM6, KMT2B, ZZZ3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops