- Basic information
- CohesinDB ID: CDBP00419439
- Locus: chr21-39259322-39259752
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 65%,
"4_Tx": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, NKX2-2, ZNF263, BRD3, PAF1, SOX2, ZSCAN21, ZBTB17, WT1, DUX4, FOXA1, HOXB13, ZNF580, ERG, ZFP64, ZNF502, ZNF384, ZNF35, GATA4, OSR2, EOMES, ZBTB44, TSHZ1, ZNF184, HIF1A, PRDM1, IKZF3, OTX2, GATA3, ZEB2, ZNF189, NKX3-1, SUPT5H, GATA1, ZNF639, CDX2, TLE3, NR3C1, CEBPB, SP7, CREB1, KLF8, FEZF1, PHOX2B, CTCF, RBM22, ZNF843, AR, GATA2, ZNF366, SIX2, FLI1, SCRT1, PHIP, FOXP1, PRDM6, ZNF528, KMT2B, ZZZ3, ZNF34, PDX1
- Target gene symbol (double-evidenced CRMs): BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops