- Basic information
- CohesinDB ID: CDBP00419440
- Locus: chr21-39262393-39262650
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 55%,
"5_TxWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, XBP1, PATZ1, FOXA1, HLF, SRSF4, PBX2, ATF3, ATF4, GLYR1, PAX5, BACH2, JMJD1C, ETV1, ESR1, HDAC8, JUN, CTCF, EP300, PYGO2, TRIM24, DDX20, E2F1, ZNF350, KMT2B, ZNF175, GATAD2A, POU5F1, TOP2A, ZNF317, ZBTB17, DUX4, ZSCAN5A, ZBTB48, DDX5, ARID3A, TBP, ERG, MYC, SMARCA4, ARID1B, GRHL3, STAT3, RCOR1, NFE2, NFRKB, NR3C1, ESRRA, CEBPB, KMT2A, EZH2, KLF8, SPI1, GATA2, ZNF777, ATF1, RUNX1, CEBPA, ZFX, CREBBP, ZNF384, ARNT, PBX4, TFDP1, ATF2, ZEB2, ZNF518A, NR2C1, SUPT5H, FOS, CDK8, MED1, ZNF584, CEBPD, ZNF264, SCRT2, NR1H2, L3MBTL2, KLF16, RBM22, SP1, HNF4A, NR4A1, ATF7, BCOR, FOXP1, PTTG1, CBX3, MTA3, FOXA2, PAF1, ZSCAN16, WT1, ZBTB33, HOXB13, ZNF589, RELA, NEUROD1, JUNB, OTX2, BATF, NRIP1, ZNF143, CEBPG, ZNF592, KLF4, SP7, NCOA3, TCF7L2, TP53, NFKB1, KAT8, AR, ZBTB40, ZNF324, EGLN2, BRD4, JUND, SCRT1, CLOCK, CUX1, IRF9, MEF2D, ZZZ3, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops