- Basic information
- CohesinDB ID: CDBP00419441
- Locus: chr21-39271032-39271717
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 54%,
"5_TxWk": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, PAF1, ZFX, ZSCAN16, MAFF, ZSCAN5A, FOXA1, ZNF205, ZNF770, HOXB13, ERG, ZNF384, NEUROD1, MYC, ONECUT1, GATA4, RAD21, SP140, GRHL3, PRDM9, GLYR1, GABPA, SUPT5H, ZNF121, SCRT2, ZMYM3, EPAS1, C11orf30, CTCF, RBM22, MAFK, HNF4A, AR, RBM25, SCRT1, KMT2B, ZZZ3, ZNF316
- Target gene symbol (double-evidenced CRMs): BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops