- Basic information
- CohesinDB ID: CDBP00419442
- Locus: chr21-39274274-39274338
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 68%,
"5_TxWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, TOP2A, ZSCAN16, GTF2B, ZBTB48, DUX4, FOXA1, ERG2, HOXB13, ZNF596, ATF3, MYC, ARNT, HIF1A, GLYR1, STAT3, NKX3-1, SUPT5H, NCOA3, SCRT2, EZH2, ESR1, CTCF, RBM22, AR, NOTCH3, BRD4, SCRT1, FOXP1, ZNF528
- Target gene symbol (double-evidenced CRMs): BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 6
- Related genes and loops