- Basic information
- CohesinDB ID: CDBP00419443
- Locus: chr21-39277603-39278116
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Data sourse: GSE132649, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, T-47D, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 56%,
"5_TxWk": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, NANOG, FOXA2, PAF1, SOX2, FOXA1, DDX5, HOXB13, ERG, ZNF384, MYC, GATA4, GATA3, GLYR1, NKX3-1, SUPT5H, GATA1, TLE3, TEAD1, PIAS1, ESR1, PHOX2B, RBM22, BAF155, BCL11A, AR, GATA2, FOXP1, PRDM6, KMT2B, ZZZ3, ZNF34
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,BRWD1,LCA5L,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops