- Basic information
- CohesinDB ID: CDBP00419451
- Locus: chr21-39308133-39308430
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Data sourse: ENCSR000BTQ, ENCSR153HNT, GSE72082
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Cell type: K-562, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 57%,
"4_Tx": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, FOXA2, E2F7, PAF1, ZFX, ZNF600, ZSCAN16, ZNF317, ZBTB48, STAT1, FOXA1, RBFOX2, ZNF18, PRDM10, KDM1A, IRF2, ZNF384, NEUROD1, MYC, PRDM1, ARNT, SOX11, OTX2, SUPT5H, FOS, NR2F6, SP7, NR2F2, TEAD1, SNAI2, NR2F1, EZH2, ZSCAN22, PHOX2B, CTCF, RBM22, KAT8, JUN, ZNF22, AR, HDAC2, HSF1, HOXA9, ZZZ3
- Target gene symbol (double-evidenced CRMs): GET1,LCA5L,SH3BGR,B3GALT5,GET1-SH3BGR,BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:39200000-39225000~~chr21:39300000-39325000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39300000-39325000~~chr21:39600000-39625000,
chr21:39300000-39325000~~chr21:39700000-39725000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39347346-39350688,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39347651-39350715,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39347106-39349452,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39347655-39350638,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39347557-39350333,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,