- Basic information
- CohesinDB ID: CDBP00419459
- Locus: chr21-39330451-39330860
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Data sourse: GSE206145-NatGen2015, GSE206145-GSE177045, GSE67783
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Cell type: MCF-7, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, CREBBP, FOXO1, ZNF384, CEBPB, BCL6, MEF2B, ATF3, EBF1, OSR2, ATF7, ZFX, ATF4, IKZF1, ATF2, TEAD4, KMT2B, SPI1, RBPJ
- Target gene symbol (double-evidenced CRMs): SH3BGR,GET1,ETS2,GET1-SH3BGR,LCA5L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops