- Basic information
- CohesinDB ID: CDBP00419470
- Locus: chr21-39354073-39354700
-
Data sourse: GSE67783, GSE111913, ENCSR153HNT
-
Cell type: K-562, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 79%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): PSMG1,HMGN1,BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000183527,
ENSG00000185658,
ENSG00000205581,
- Related loop:
chr21:38800000-38825000~~chr21:39325000-39350000,
chr21:39175000-39200000~~chr21:39350000-39375000,
chr21:39313200-39315343~~chr21:39347346-39350688,
chr21:39313201-39315232~~chr21:39347651-39350715,
chr21:39313213-39315341~~chr21:39347106-39349452,
chr21:39313217-39315223~~chr21:39347655-39350638,
chr21:39313225-39315438~~chr21:39347557-39350333,
chr21:39320997-39322719~~chr21:39347655-39350638,
chr21:39325000-39350000~~chr21:39425000-39450000,
chr21:39347365-39350526~~chr21:39387267-39389644,
chr21:39347651-39350709~~chr21:39387578-39389687,