- Basic information
- CohesinDB ID: CDBP00419471
- Locus: chr21-39359443-39359751
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Data sourse: ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: KLF13, ID3, HINFP, PBX2, ZNF589, YY1, RELA, BACH1, ZNF740, NR2C1, TEAD2, NFE2, ZNF592, ETV1, TAF7, HDAC8, ZNF175, NR4A1, IRF1, PTRF, PYGO2, CREB3, DDX20, JUND, IRF9, MEF2D, ILK, AHR, PTTG1
- Target gene symbol (double-evidenced CRMs): BRWD1,PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops