- Basic information
- CohesinDB ID: CDBP00419479
- Locus: chr21-39383016-39384062
-
Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, ENCSR153HNT
-
Cell type: MCF-7, H1-hESC, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 94%,
"15_Quies": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): BRWD1,GET1,ETS2,PSMG1,ERG,GET1-SH3BGR,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000183778,
- Related loop:
chr21:34350000-34375000~~chr21:39375000-39400000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38575000-38600000~~chr21:39375000-39400000,
chr21:38750000-38775000~~chr21:39375000-39400000,
chr21:38775000-38800000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39375000-39400000,
chr21:38900000-38925000~~chr21:39375000-39400000,
chr21:38925000-38950000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39275000-39300000~~chr21:39375000-39400000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,
chr21:39335976-39337473~~chr21:39387323-39389534,
chr21:39336013-39337477~~chr21:39387504-39389563,
chr21:39347365-39350526~~chr21:39387267-39389644,
chr21:39347651-39350709~~chr21:39387578-39389687,
chr21:39372709-39374761~~chr21:39387355-39389610,
chr21:39372834-39374834~~chr21:39387326-39389699,
chr21:39372912-39374798~~chr21:39387504-39389563,
chr21:39372914-39374485~~chr21:39387578-39389687,
chr21:39372946-39374777~~chr21:39387278-39389675,
chr21:39372954-39374915~~chr21:39387521-39389734,
chr21:39373048-39374478~~chr21:39387575-39389540,
chr21:39373064-39374576~~chr21:39387323-39389534,
chr21:39373100-39374555~~chr21:39387268-39389940,
chr21:39375000-39400000~~chr21:39625000-39650000,