- Basic information
- CohesinDB ID: CDBP00419480
- Locus: chr21-39384730-39386685
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE116868, GSE131606, GSE25021, ENCSR000EDW, GSE165895, ENCSR917QNE, GSE67783, GSE86191, GSE101921, GSE206145-NatGen2015, ENCSR703TNG, ENCSR000EEG, ENCSR338DUC, ENCSR000BLS, GSE206145, ENCSR247LSH, ENCSR767DFK, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR054FKH, ENCSR537EFT, ENCSR153HNT
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hep-G2, MB157, A-549, HCAEC, HSPC, K-562, Liver, HFFc6, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 27%,
"5_TxWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, FOXA1, RXRB, MLL4, KDM3A, HDGF, THAP1, ZBTB44, IKZF3, MORC2, PAX5, ZNF320, TEAD1, ZNF121, LMO2, OCA2, PITX3, HDAC8, ZNF561, ARID5B, SOX5, E2F4, ZNF674, DEK, ZNF528, RFX3, KMT2B, GATAD2A, NANOG, POU5F1, ZNF263, BRD3, TOP2A, CTBP1, ZMYND11, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, EZH1, SMARCA4, FOXK2, UBN1, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, MIXL1, KLF17, GATA2, ZNF644, MXD3, FLI1, DRAP1, MXI1, HCFC1, RELB, EP400, RUNX1, CEBPA, NKX2-2, HDAC1, IRF3, TET2, ZNF654, SP5, TRIM22, SMARCC1, PRDM10, ZNF549, ZBTB2, TFDP1, ZBTB10, ATF2, SP2, SMARCB1, GMEB1, TERF1, PML, PIAS1, SMAD1, EVI1, MBD1, GSPT2, IKZF5, ARID2, RBM25, AFF1, ELL2, NFATC3, CBFA2T2, CBX3, ZNF207, CREM, CHD2, SS18, ZNF17, ZSCAN16, WT1, MEF2C, CREB3L1, NEUROD1, JUNB, ZFP36, BATF, MAF1, PLAG1, KLF4, ZFP69B, BCL11B, ZBTB6, MED, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, HSF1, ZBTB26, NCOR1, SCRT1, ILF3, FOSL1, ZNF660, HNF1A, XBP1, KDM4B, ZNF101, PBX2, HNRNPK, TSC22D4, ATF3, ZFP64, RUNX3, CBFB, TP63, ZSCAN4, MITF, ZNF467, JMJD1C, MAF, INTS11, ELF1, RBM39, SNAI2, KLF10, SMAD5, ZNF624, FUS, JUN, CTCF, TAF3, MNT, LMO1, ZBTB20, DPF2, RYBP, IRF4, ZNF423, ZNF280A, PDX1, RBPJ, TFAP2C, MLX, MTA2, ZBTB17, ZBTB48, ZSCAN21, NONO, SRF, DDX5, NBN, ZNF2, HOMEZ, TSHZ1, FOXP2, RXRA, PRDM14, MIER3, HNRNPH1, TERF2, VDR, NR3C1, ESRRA, STAT5B, KMT2A, TBL1XR1, KLF8, GRHL2, EBF3, SSRP1, ZSCAN29, SMARCA5, NFIL3, CC2D1A, THAP11, CTNNB1, ZNF585A, SOX13, AFF4, ZNF770, ZNF18, SP3, DAXX, BACH1, ARNT, ZNF48, HMBOX1, NFYA, ZEB2, PBX3, NCAPH2, ZNF10, HMGXB4, TEAD3, ZXDB, U2AF1, TAF7, KLF9, USF1, BCL11A, SP1, TFAP2A, ATF7, ASH2L, CTBP2, ZNF623, SMC3, STAG1, MLLT1, STAG2, ZNF394, TRP47, AGO1, MTA3, EBF1, MAFF, ZNF580, ZKSCAN1, BCL3, KDM1A, ZIC2, PCGF1, GATA3, TAL1, NRIP1, ZNF143, AGO2, MTA1, CBX2, TP53, ZNF334, ZSCAN22, BRD2, PHF5A, KAT8, TBX21, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, CUX1, ZSCAN23, ZFP42, PGR, CBX5, SOX2, PATZ1, LEO1, UBTF, TFAP4, SIN3B, SETX, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, ZNF217, ESR1, KLF1, SOX4, E2F6, TRIM24, RFX5, PRKDC, GTF2F1, GLIS1, POU2F2, KDM4C, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, SMARCC2, ETS1, MYC, ARID1B, NKX2-1, MCRS1, GABPA, STAT3, IKZF1, DNMT3B, SRSF3, EZH2, ZNF652, PHF8, SPI1, PCBP1, HDAC2, INTS13, GATAD2B, ZNF490, NCOA2, NFYB, ZNF76, ETV5, BCL6, SIN3A, ERG3, RARA, NFYC, ZNF35, ZNF384, TAF15, CREBBP, SMAD4, ZNF518A, CDK8, CSNK2A1, ZEB1, ZMYM3, NCOA1, GTF3C2, ZNF22, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, ZNF34, CXXC4, PPARG, TBL1X, ZNF692, GTF2B, ZNF30, ZNF574, TCF7, YY2, FOXO3, RELA, TARDBP, SKIL, MGA, MAX, ZNF223, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, PKNOX1, RUVBL1, MYOD1, AR, ZNF445, ZNF324, HEXIM1, ZNF280D, ZZZ3, AHR, DMAP1, MBD3, FOSL2, ZNF391, HMG20A, ZSCAN5C, HMGN3, MEIS2, SUZ12, RBFOX2, ZFHX2, SFMBT1, ZNF90, INSM2, NFIC, ZNF362, CTCFL, PRDM1, GLYR1, MECOM, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, HNF1B, USF2, TCF12, EP300, BAF155, GATA6, PRDM4, GLI4, SOX6, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, RUNX1T1, CDK7, ID3, GATAD1, ARID3A, ASCL1, MIER1, ZNF341, USP7, RAD21, GRHL3, APC, XRCC5, ZNF614, NFE2, ZNF639, ZNF750, JMJD6, TFE3, HBP1, ZNF664, IRF1, GTF3C5, SREBF1, ZGPAT, MRTFB, ATF1, PTBP1, CBX1, SMC1A, SIRT6, FIP1L1, ZFX, ZNF335, SMAD3, PCBP2, NMYC, TWIST1, IRF2, PRPF4, NOTCH1, BRD9, RUNX2, CDK6, GATA4, OSR2, ZNF184, ZSCAN30, SMAD2, NRF1, NR2C1, FOS, CHD1, SUPT5H, TGIF2, MED1, CEBPD, KDM6B, MYB, SCRT2, VEZF1, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, CCNT2, POU2F3, PHIP, TCF3, SKI, NELFA, KLF13, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, YY1, ZNF148, ASXL1, BRCA1, SP140, ZNF610, HIF1A, OTX2, ZNF740, ZNF449, GATA1, HAND2, CEBPG, SP7, NCOA3, NR2F2, ZNF687, ZNF213, NFKBIZ, BHLHE40, TAF1, ZNF579, ZBTB40, ZBTB42, MYNN, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): BRWD1,PSMG1,ETS2,GET1,B3GALT5,GET1-SH3BGR,ERG
- Function elements
- Human SNPs: Esotropia
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000183778,
- Related loop:
chr21:34350000-34375000~~chr21:39375000-39400000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38575000-38600000~~chr21:39375000-39400000,
chr21:38750000-38775000~~chr21:39375000-39400000,
chr21:38775000-38800000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39375000-39400000,
chr21:38900000-38925000~~chr21:39375000-39400000,
chr21:38925000-38950000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39275000-39300000~~chr21:39375000-39400000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,
chr21:39335976-39337473~~chr21:39387323-39389534,
chr21:39336013-39337477~~chr21:39387504-39389563,
chr21:39347365-39350526~~chr21:39387267-39389644,
chr21:39347651-39350709~~chr21:39387578-39389687,
chr21:39372709-39374761~~chr21:39387355-39389610,
chr21:39372834-39374834~~chr21:39387326-39389699,
chr21:39372912-39374798~~chr21:39387504-39389563,
chr21:39372914-39374485~~chr21:39387578-39389687,
chr21:39372946-39374777~~chr21:39387278-39389675,
chr21:39372954-39374915~~chr21:39387521-39389734,
chr21:39373048-39374478~~chr21:39387575-39389540,
chr21:39373064-39374576~~chr21:39387323-39389534,
chr21:39373100-39374555~~chr21:39387268-39389940,
chr21:39375000-39400000~~chr21:39625000-39650000,