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Basic information

CohesinDB ID: CDBP00419483

Locus: chr21-39396172-39397021

Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE67783, ENCSR000BKV, GSE72082, GSE86191, GSE76893, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE206145, ENCSR703TNG, GSE25021, GSE97394

Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, HUES64, K-562, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 6% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.900

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 52%, "4_Tx": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MYC, ZFX, GRHL3, WT1, ZNF143

Target gene symbol (double-evidenced CRMs): GET1,ETS2,B3GALT5,GET1-SH3BGR,BRWD1,PSMG1,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 72

Number of somatic mutations (non-coding): 24

Related genes and loops

Related gene: ENSG00000157554, ENSG00000157557, ENSG00000183527, ENSG00000185658, ENSG00000285815, ENSG00000182093, ENSG00000183778,

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Deatailed information for cohesin site CDBP00419483