- Basic information
- CohesinDB ID: CDBP00419485
- Locus: chr21-39398702-39399019
-
Data sourse: GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 91%,
"4_Tx": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, BRD4, ZEB2, ZBTB33, RBM22, SUPT5H
- Target gene symbol (double-evidenced CRMs): B3GALT5,GET1,ERG,PSMG1,ETS2,GET1-SH3BGR,BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000183778,
- Related loop:
chr21:34350000-34375000~~chr21:39375000-39400000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38575000-38600000~~chr21:39375000-39400000,
chr21:38750000-38775000~~chr21:39375000-39400000,
chr21:38775000-38800000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39375000-39400000,
chr21:38850000-38875000~~chr21:39400000-39425000,
chr21:38900000-38925000~~chr21:39375000-39400000,
chr21:38925000-38950000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39275000-39300000~~chr21:39375000-39400000,
chr21:39275000-39300000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39375000-39400000~~chr21:39625000-39650000,
chr21:39400000-39425000~~chr21:39700000-39725000,