- Basic information
- CohesinDB ID: CDBP00419495
- Locus: chr21-39420248-39420774
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Data sourse: ENCSR153HNT, ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, CBFA2T2, MAFG, HDAC1, MTA3, MAFF, FOXA1, DDX5, NBN, PRDM10, HDGF, ZNF384, SMARCC2, ATF3, BRD9, CHAMP1, SMARCA4, ARID1B, ZNF24, NKX2-1, ZEB2, SMARCE1, TAL1, CBFA2T3, GATA1, LEF1, NFE2, CEBPG, CEBPB, ZNF592, TRIM28, NR2F1, VEZF1, C11orf30, L3MBTL2, ZNF334, KLF16, TCF12, EP300, E4F1, MNT, AR, DPF2, ZBTB40, HDAC2, ZBTB7A, GATA2, TRIM24, SOX6, ATF7, RNF2, NCOR1, ILF3, BCOR, TEAD4, ATF1, MLLT1, ZNF316
- Target gene symbol (double-evidenced CRMs): PSMG1,BRWD1,GET1-SH3BGR,LCA5L,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
- Related loop:
chr21:38800000-38825000~~chr21:39425000-39450000,
chr21:38850000-38875000~~chr21:39400000-39425000,
chr21:39000000-39025000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39275000-39300000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39325000-39350000~~chr21:39425000-39450000,
chr21:39400000-39425000~~chr21:39700000-39725000,