- Basic information
- CohesinDB ID: CDBP00419497
- Locus: chr21-39422232-39423256
-
Data sourse: ENCSR000EAC, ENCSR000DZP, GSE72082, ENCSR000BKV, ENCSR879KXD, ENCSR703TNG, GSE115602
-
Cell type: K-562, GM12878, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 73%,
"5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, MEIS2, XBP1, FOXA1, RBFOX2, PBX2, UBTF, ATF3, RUNX3, ATF4, SMARCE1, PAX5, ELF1, TRIM28, E2F5, BCLAF1, NFE2L2, ZNF217, ESR1, JUN, TCF12, CTCF, EP300, E4F1, BAF155, DPF2, IRF4, TRIM24, SOX6, PRKDC, E2F1, TEAD4, ZNF175, EHMT2, TFAP2C, POU2F2, CTBP1, MTA2, DUX4, ZBTB48, NBN, ARID3A, ERG, SMARCC2, MYC, SMARCA4, ARID1B, GRHL3, GABPA, STAT3, NKX3-1, IKZF1, LEF1, RCOR1, NR2F6, NFE2, CEBPB, ESRRA, CREB1, GRHL2, SPI1, ZNF664, HDAC2, GATA2, SIX2, ZSCAN29, SMARCA5, ZNF766, RELB, EP400, ATF1, SMC1A, HDAC1, LDB1, TRIM22, ZMIZ1, BRD9, ZNF184, ARNT, PRDM9, ZEB2, HMBOX1, CBFA2T3, SMARCB1, PML, CEBPD, TERF1, PIAS1, NCOA1, L3MBTL2, STAT5A, KLF16, SP1, BCL11A, REST, ZBTB7A, CCNT2, ATF7, POU2F3, ASH2L, AFF1, MLLT1, NFATC3, CBFA2T2, CBX3, MTA3, CREM, RBBP5, MEIS1, ZSCAN16, GTF2B, ZBTB33, TCF7, HOXB13, ZKSCAN1, KDM1A, RELA, TARDBP, ZFP36, SKIL, HIF1A, GATA3, BATF, TAL1, MAX, NRIP1, GATA1, ZNF143, CEBPG, ZNF592, GFI1B, NR2F2, NCOA3, TCF7L2, NR2F1, TP53, PKNOX1, ZNF334, ELF3, TBX21, BHLHE40, AR, ZBTB40, EGLN2, RNF2, IKZF2, BRD4, ILF3, JUND, NCOR1, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,PSMG1,GET1,LCA5L,BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 288
- Number of somatic mutations (non-coding): 72
- Related genes and loops
- Related gene:
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
- Related loop:
chr21:38800000-38825000~~chr21:39425000-39450000,
chr21:38850000-38875000~~chr21:39400000-39425000,
chr21:39000000-39025000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39275000-39300000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39325000-39350000~~chr21:39425000-39450000,
chr21:39400000-39425000~~chr21:39700000-39725000,