Deatailed information for cohesin site CDBP00419501

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  • Basic information
  • CohesinDB ID: CDBP00419501
  • Locus: chr21-39430503-39430780
  • Data sourse: ENCSR000EGW, ENCSR000BKV
  • Cell type: K-562
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 0% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.989
  • Subunit: SMC3,Rad21
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: TES
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 91% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 70%, "7_Enh": 18%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: FOSL1, SOX2, MEIS2, XBP1, FOXA1, HLF, PBX2, HDGF, NFIC, CHD7, PRDM1, SMARCE1, ZNF320, TEAD1, TRIM28, RBM39, NFE2L2, ZFP91, CTCF, TCF12, EP300, E4F1, MNT, DPF2, E2F6, TRIM24, SOX6, DDX20, ZNF528, TEAD4, EHMT2, PDX1, GLIS1, NANOG, CHD8, MTA2, ZBTB48, NBN, ERG2, ARID3A, TBP, ASCL1, MIER1, SMARCC2, SMARCA4, EOMES, ARID1B, RAD21, GRHL3, FOXK2, GABPA, XRCC5, IKZF1, LEF1, RCOR1, DACH1, NFRKB, ZNF639, NFE2, NR2F6, CEBPB, NR3C1, CREB1, EPAS1, TBL1XR1, ARHGAP35, ZHX2, HDAC2, GATA2, TAF9B, SMARCA5, NFIL3, EP400, ATF1, RUNX1, MAFG, CEBPA, HDAC1, ZFX, SMAD3, ERG3, SMARCC1, PRDM10, ZBTB2, BRD9, SMAD2, ARNT, BACH1, SMAD4, HMBOX1, ZEB2, CBFA2T3, FOXM1, CDK8, MED1, TEAD3, PML, CEBPD, ZMYM3, C11orf30, GTF3C2, NCOA1, L3MBTL2, HIF2A, STAT5A, KLF16, MAFK, USF1, BCL11A, NKX2-5, REST, ZBTB7A, ATF7, ASH2L, BCOR, MLLT1, NFATC3, CBFA2T2, ZNF316, CBX3, MTA3, CREM, CHD2, FOXA2, ZNF600, MAFF, MEF2C, ZBTB33, CDK9, ZKSCAN1, KDM1A, YY1, RELA, ZNF148, NEUROD1, JUNB, ZIC2, HIF1A, OTX2, TAL1, MAX, GATA1, ZNF143, CEBPG, ZFP69B, ZNF592, GFI1B, NR2F2, NR2F1, PKNOX1, T, BHLHE40, AR, PTRF, ZBTB40, EGR1, MYNN, NCOR1, RNF2, BRD4, ILF3, JUND, MAZ, MEF2D, ZNF24, AHR
  • Target gene symbol (double-evidenced CRMs): PSMG1,LCA5L,ETS2,GET1,GET1-SH3BGR,BRWD1,HMGN1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 6
  • Number of somatic mutations (non-coding): 2
  • Related genes and loops
  • Related gene: ENSG00000157557, ENSG00000183527, ENSG00000185658, ENSG00000205581, ENSG00000285815, ENSG00000182093, ENSG00000157578,
  • Related loop: chr21:38800000-38825000~~chr21:39425000-39450000, chr21:39000000-39025000~~chr21:39425000-39450000, chr21:39175000-39200000~~chr21:39425000-39450000, chr21:39200000-39225000~~chr21:39425000-39450000, chr21:39225000-39250000~~chr21:39425000-39450000, chr21:39300000-39325000~~chr21:39425000-39450000, chr21:39325000-39350000~~chr21:39425000-39450000,
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