- Basic information
- CohesinDB ID: CDBP00419504
- Locus: chr21-39436505-39436763
-
Data sourse: GSE67783
-
Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, ONECUT1, EOMES, ZFX, ZNF664, DUX4, GABPA, PHOX2B, HOXB13, SPI1, STAG1, ZNF316, ZNF19
- Target gene symbol (double-evidenced CRMs): BRWD1,PSMG1,HMGN1,GET1-SH3BGR,ETS2,LCA5L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000205581,
ENSG00000285815,
ENSG00000157578,
- Related loop:
chr21:38504739-38507562~~chr21:39440834-39442538,
chr21:38800000-38825000~~chr21:39425000-39450000,
chr21:39000000-39025000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39325000-39350000~~chr21:39425000-39450000,