- Basic information
- CohesinDB ID: CDBP00419511
- Locus: chr21-39461514-39462016
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Data sourse: GSE62063, GSE206145-GSE177045
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Cell type: MCF-7, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 80%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, POU2F2, MEF2B, POU5F1, EBF1, FOXA1, SRF, CDK9, MEF2A, NFYC, MYC, RUNX3, TCF4, GABPA, BATF, NFYA, FOXM1, MED1, EZH2, BCL11A, SPI1, BHLHE40, GATA2, IRF4, RBM25, BRD4, FOXP1, NFYB, RBPJ
- Target gene symbol (double-evidenced CRMs): ERG,GET1-SH3BGR,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops