- Basic information
- CohesinDB ID: CDBP00419513
- Locus: chr21-39482674-39482951
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Data sourse: GSE67783, GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 81%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, SOX2, XBP1, FOXA1, SUZ12, BMI1, ZFP64, CHD7, PRDM1, ZNF444, TEAD1, BCLAF1, ZNF121, ESR1, OCA2, ZIK1, CTCF, BAF155, ZNF157, PRDM4, ZNF407, ZNF512B, ZNF776, EHMT2, RBPJ, YBX1, ZNF239, TOP2A, CTBP1, ZBTB1, ZSCAN21, DUX4, ZSCAN5A, ZBTB48, NONO, MYC, SMARCA4, GRHL3, GABPA, ZNF639, NR3C1, CEBPB, ESRRA, CREB1, SPI1, GATA2, GATAD2B, SIX2, SMARCA5, SALL2, ZNF707, CRY1, ZFX, SMAD3, CBX8, CREBBP, RUNX2, ZNF184, NFIB, ARNT, MED1, PIAS1, TBX5, USF1, ZNF207, MTA3, FOXA2, ZNF692, ZNF662, HOXB13, ZKSCAN1, YY1, RELA, ZNF148, SP140, TCF4, ZNF311, ZNF143, CBX2, NCOA3, ZNF544, ZNF791, ZNF687, ZBTB6, PKNOX1, AR, PAX3-FOXO1, RNF2, BRD4
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops