- Basic information
- CohesinDB ID: CDBP00419514
- Locus: chr21-39483873-39484360
-
Data sourse: GSE72082, GSE138405, ENCSR000BLY, ENCSR879KXD, ENCSR703TNG, GSE126990
-
Cell type: K-562, Hela-Kyoto, MCF-7, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 78%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, MEIS2, XBP1, FOXA1, HLF, PBX2, ATF3, NFIC, CHD7, WDHD1, ATF4, SMARCE1, HDAC3, ZNF629, TEAD1, TRIM28, ETV1, NFE2L2, ZNF217, ESR1, JUN, TCF12, EP300, BAF155, DPF2, TRIM24, SOX6, TEAD4, PDX1, MYCN, CTBP1, ZBTB48, NBN, ARID3A, ERG, PAX6, SMARCC2, SMARCA4, ARID1B, RAD21, LHX2, RXRA, STAT3, NKX3-1, IKZF1, LEF1, RCOR1, NR2F6, NR3C1, CEBPB, CREB1, EBF3, HDAC2, GATA2, ZNF766, NCOA2, CBX1, HDAC1, NKX2-2, SIN3A, ZNF534, CBX8, SMARCC1, TWIST1, CREBBP, ZXDC, RUNX2, GATA4, OSR2, ZNF184, GR, PBX4, ARNT, ATF2, ZEB2, PBX3, CBFA2T3, MAFB, FOS, MED1, PML, TERF1, PIAS1, TBX5, USF1, BCL11A, CCNT2, ATF7, CTBP2, PHIP, PPARG, FOXA2, MTA3, ZNF600, ZNF692, GTF2B, FOXF1, HOXB13, ZKSCAN1, ZNF318, KDM1A, RELA, JUNB, NEUROD1, SKIL, HIF1A, GATA3, TAL1, MAX, ZNF143, MTA1, GATA1, GFI1B, NR2F2, NR2F1, PKNOX1, PHOX2B, AR, EGLN2, RNF2, JUND, BRD4, MEF2D, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops