- Basic information
- CohesinDB ID: CDBP00419516
- Locus: chr21-39489307-39489579
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, MEF2B, MAFG, CEBPA, NKX2-2, EBF1, ZNF316, ZSCAN5D, ZFX, ZNF692, XBP1, WT1, MTA2, ZBTB48, FOXA1, DUX4, YY1, RELA, USP7, MYC, SMARCA4, OSR2, PRDM1, GRHL3, HIF1A, TAL1, NFE2, ZNF639, CEBPB, NCOA3, ZNF121, EZH2, TP53, OCA2, ESR1, CTCF, AR, ZNF366, ZBTB42, NOTCH3, BRD4, MAZ, HCFC1R1, SMC3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 1
- Related genes and loops