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Basic information

CohesinDB ID: CDBP00419519

Locus: chr21-39496791-39497328

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 89%, "5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, KLF4, RXR, SMARCA2, POU5F1, SOX2, GRHL3, GTF2B, BRD4, XBP1, TAL1, PAX5, CTCF, NRIP1, FOS

Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 15

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000285815, ENSG00000185437,

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Deatailed information for cohesin site CDBP00419519