- Basic information
- CohesinDB ID: CDBP00419530
- Locus: chr21-39538672-39539034
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BLS, GSE105028, GSE106870, GSE97394
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Cell type: H1-hESC, Hep-G2, CVB-hiPSC, H9-hESC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 61%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, NANOG, CTNNB1, CHD8, ZNF207, ZNF263, POU5F1, ZNF316, SOX2, TEAD4, SIN3A, CBX1, RBBP5, SMAD3, MAFF, ZFX, FOXA1, ZSCAN5A, KDM1A, YY1, ETS1, NFIC, SMAD2, BRG1, CHD7, PRDM1, ARNT, PBX4, RAD21, PCGF1, MORC2, ATF2, NKX2-1, GATA3, NRF1, STAT3, MAX, PRDM14, ZNF639, KLF4, TRIM28, ZNF121, SMAD1, EZH2, KDM5B, TP53, ESR1, KLF9, C11orf30, ELF3, TCF12, BRD2, SP1, EP300, BCL11A, NIPBL, MAFK, IRF1, CTCF, HDAC2, E2F6, FLI1, ASH2L, JUND, BRD4, BCOR, FOXP1, ZNF350, ZIM3, TFAP2C
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops