- Basic information
- CohesinDB ID: CDBP00419532
- Locus: chr21-39555185-39555620
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Data sourse: GSE206145, GSE67783
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Cell type: RPE, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, EZH2phosphoT487, NKX2-2, SOX2, ZFX, POU4F2, ZSCAN16, XBP1, WT1, FOXA1, ERG, RELA, BMI1, RFX1, CHD7, STAT3, MAX, NKX3-1, MYOG, PIAS1, EZH2, KDM5B, PITX3, NFKB1, PAX3-FOXO1, TAF1, REST, MXI1, BRD4, TEAD4, PDX1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops