- Basic information
- CohesinDB ID: CDBP00419537
- Locus: chr21-39568241-39568686
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Data sourse: GSE67783, GSE68388
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Cell type: HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 51%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, CBFA2T2, POU2F2, MYCN, EZH2phosphoT487, TOP2A, ZFX, XBP1, WT1, ZBTB48, ZSCAN5A, TET2, ERG3, PBX2, CDK9, HOXB13, YY1, RELA, ZNF384, ASCL1, MYC, ZBTB5, RAD21, SP140, GRHL3, ARNT, MAX, ZNF143, FOS, NCOA3, TRIM28, ZNF573, EZH2, ESR1, PKNOX1, TP53, ZNF334, MYOD1, CTCF, TCF12, ARRB1, SPI1, AR, ZNF257, RYBP, E2F6, POU2F3, BRD4, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 2
- Related genes and loops