- Basic information
- CohesinDB ID: CDBP00419540
- Locus: chr21-39578776-39580507
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE76893, ENCSR703TNG, GSE25021
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CBX1, TOP2A, SIN3A, ZFX, CTBP1, TEAD4, FOXA1, CBX8, ERG2, HOXB13, CREBBP, ZNF384, TARDBP, AHR, RAD21, ARNT, HIF1A, GATA3, SMARCE1, MAX, NRIP1, ZNF143, MTA1, CEBPB, NR2F2, CREB1, EZH2, ZNF217, ESR1, ZNF687, GRHL2, ZNF334, ZNF507, USF1, AR, DPF2, HDAC2, GATAD2B, RAD51, CUX1, E2F1, NCOA2, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 0
- Related genes and loops