- Basic information
- CohesinDB ID: CDBP00419541
- Locus: chr21-39580999-39581836
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, GSE72082, GSE86191, GSE110061, GSE25021, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, ENCSR703TNG, GSE145327, GSE97394
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Cell type: MCF-7, H1-hESC, Fibroblast, HCT-116, HUES64, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX1, CHD8, FOXA2, ZSCAN5D, SIN3A, ZFX, TEAD4, XBP1, SMAD3, FOXA1, ERG3, ERG2, HOXB13, MLL4, ERG, KDM1A, RELA, RAD21, GRHL3, HIF1A, SOX11, ARNT, MAX, ZNF143, NCOA3, SCRT2, SMAD1, EZH2, ESR1, OCA2, CTCF, BAF155, AR, NOTCH3, SCRT1, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops