- Basic information
- CohesinDB ID: CDBP00419543
- Locus: chr21-39587741-39588079
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 68%,
"9_Het": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, HDAC1, CREM, ZFX, MEIS2, TEAD4, FOXA1, ZNF662, BAHD1, PBX2, ZNF549, ZNF300, ERG, IRF2, CREBBP, OGG1, SMARCA4, ARID1B, GRHL3, NKX2-1, GATA3, TAL1, CBFA2T3, STAT3, NRIP1, GATA1, IKZF1, RCOR1, ZNF449, ESRRA, GFI1B, PML, TEAD1, NCOA3, SCRT2, NR2F1, PIAS1, ZNF512, ESR1, PKNOX1, C11orf30, SETDB1, EP300, BAF155, AR, DPF2, GATA2, JUND, NCOA2, ATF1, ZNF316
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops