- Basic information
- CohesinDB ID: CDBP00419549
- Locus: chr21-39607665-39608007
-
Data sourse: GSE206145, GSE67783, GSE86191
-
Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 45%,
"14_ReprPCWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ETS2,BRWD1,SH3BGR,B3GALT5,GET1-SH3BGR,PCP4,ERG,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000185658,
ENSG00000285815,
ENSG00000185437,
ENSG00000183778,
ENSG00000183036,
ENSG00000157601,
- Related loop:
chr21:35775000-35800000~~chr21:39600000-39625000,
chr21:38375000-38400000~~chr21:39600000-39625000,
chr21:38525000-38550000~~chr21:39600000-39625000,
chr21:38625000-38650000~~chr21:39600000-39625000,
chr21:38800000-38825000~~chr21:39600000-39625000,
chr21:38850000-38875000~~chr21:39600000-39625000,
chr21:39200000-39225000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39600000-39625000,
chr21:39300000-39325000~~chr21:39600000-39625000,
chr21:39500000-39525000~~chr21:39600000-39625000,
chr21:39600000-39625000~~chr21:39700000-39725000,
chr21:39600000-39625000~~chr21:39850000-39875000,
chr21:39600000-39625000~~chr21:39900000-39925000,
chr21:39600000-39625000~~chr21:39950000-39975000,
chr21:39600000-39625000~~chr21:40050000-40075000,
chr21:39600000-39625000~~chr21:40075000-40100000,
chr21:39600000-39625000~~chr21:40100000-40125000,
chr21:39600000-39625000~~chr21:41000000-41025000,
chr21:39600000-39625000~~chr21:41075000-41100000,
chr21:39600000-39625000~~chr21:41425000-41450000,