- Basic information
- CohesinDB ID: CDBP00419564
- Locus: chr21-39652021-39652489
-
Data sourse: GSE206145-NatGen2015, GSE86191
-
Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 37%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GLIS1, PGR, FOXA2, EZH2phosphoT487, ZNF263, ZFX, WT1, ZBTB48, SRF, RUNX2, MYC, ZIC2, GRHL3, TAL1, FOS, IKZF1, CDK8, DNMT3B, KLF5, CREB1, TFAP2C, EZH2, KDM5B, OCA2, MYOD1, CTCF, BCL11A, PAX3-FOXO1, AR, NCOR1, JUND, BRD4, TEAD4, RBPJ
- Target gene symbol (double-evidenced CRMs): PSMG1,BRWD1,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000183527,
ENSG00000185658,
ENSG00000183778,
- Related loop:
chr21:39175000-39200000~~chr21:39625000-39650000,
chr21:39175000-39200000~~chr21:39650000-39675000,
chr21:39375000-39400000~~chr21:39625000-39650000,
chr21:39525000-39550000~~chr21:39625000-39650000,
chr21:39625000-39650000~~chr21:41650000-41675000,
chr21:39625000-39650000~~chr21:42975000-43000000,
chr21:39650000-39675000~~chr21:39750000-39775000,
chr21:39650000-39675000~~chr21:40925000-40950000,