- Basic information
- CohesinDB ID: CDBP00419575
- Locus: chr21-39679749-39679955
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Data sourse: GSE138405, GSE120943, GSE98367
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Cell type: Hela-Kyoto, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 80%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, FOXA2, CTBP1, ZBTB17, FOXA1, ZNF513, ZNF596, CREBBP, ZBTB2, GATA4, GATA3, GATA1, DACH1, GMEB1, CREB1, MCM7, ESR1, TRPS1, BCL11A, GATA6, DPF2, GATA2, GATAD2B, ZNF366, HSF1, CTBP2, CUX1, ZNF316
- Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops