- Basic information
- CohesinDB ID: CDBP00419578
- Locus: chr21-39690435-39690841
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE131606, GSE25021, ENCSR000EAC, ENCSR000BKV, GSE138405, ENCSR703TNG, GSE106870, GSE116344, GSE145327, ENCSR000BLS, ENCSR000ECE, ENCSR000EHX, GSE97394, ENCSR000BTQ, GSE129526, GSE68388, GSE50893
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, RH4, Hep-G2, CVB-hiPSC, GM12878, GM2588, HUES64, H9-hESC, SK-N-SH, K-562, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, HDAC1, FOXA2, NKX2-2, TOP2A, MTA2, FOXA1, ZNF19, CREBBP, ZBTB2, GATA4, RAD21, GATA3, NKX3-1, GATA1, MTA1, DACH1, GMEB1, NR2F2, CEBPD, MCM7, EZH2, ESR1, TRPS1, PHOX2B, CTCF, BCL11A, AR, GATA6, HDAC2, GATA2, GATAD2B, ZNF366, BRD4, STAG1
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops