- Basic information
- CohesinDB ID: CDBP00419579
- Locus: chr21-39696739-39697109
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, FOXA2, NKX2-2, MYCN, ZFX, XBP1, WT1, FOXA1, ERG3, ERG2, HOXC5, ASCL1, MYC, CDK6, RUNX2, RFX1, SP140, GRHL3, MAX, NKX3-1, PLAG1, NCOA3, CREB1, EZH2, STAG1, ESR1, EGR2, CTCF, GATA6, GATA2, NOTCH3, BRD4, SMC3, NCOR2, PDX1, EED
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
- Related loop:
chr21:39100000-39125000~~chr21:39700000-39725000,
chr21:39150000-39175000~~chr21:39700000-39725000,
chr21:39225000-39250000~~chr21:39700000-39725000,
chr21:39300000-39325000~~chr21:39700000-39725000,
chr21:39400000-39425000~~chr21:39700000-39725000,
chr21:39500000-39525000~~chr21:39675000-39700000,
chr21:39500000-39525000~~chr21:39700000-39725000,
chr21:39525000-39550000~~chr21:39700000-39725000,
chr21:39550000-39575000~~chr21:39700000-39725000,
chr21:39600000-39625000~~chr21:39700000-39725000,
chr21:39700000-39725000~~chr21:41425000-41450000,