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Basic information

CohesinDB ID: CDBP00419581

Locus: chr21-39699714-39700227

Data sourse: GSE206145, GSE67783

Cell type: RPE, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 69% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 59%, "14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CEBPA, POU5F1, EBF1, SOX2, ZFX, XBP1, GTF2B, DUX4, ZNF662, ERG3, ZNF792, TBP, RELA, CREBBP, CHD7, ARNT, ZNF311, TAL1, ZNF143, NCOA3, SCRT2, EZH2, ESR1, ZNF334, CTCF, SP1, SPI1, MNT, PAX8, BRD4, SCRT1, MAZ, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): BRWD1,B3GALT5,GET1,LCA5L,PSMG1,MX1,SH3BGR,GET1-SH3BGR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000183527, ENSG00000185658, ENSG00000285815, ENSG00000182093, ENSG00000157578, ENSG00000185437, ENSG00000183778, ENSG00000157601,

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Deatailed information for cohesin site CDBP00419581