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Basic information

CohesinDB ID: CDBP00419583

Locus: chr21-39704596-39707757

Data sourse: GSE206145-GSE177045, GSE104888, GSE72082, ENCSR000BSB, ENCSR501LQA, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE105028, GSE121355, GSE103477, GSE131606, ENCSR330ELC, GSE25021, ENCSR000BUC, GSE115602, ENCSR000EFJ, ENCSR000BTU, GSE93080, GSE67783, GSE86191, GSE138405, GSE76893, GSE101921, GSE135093, GSE51234, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, ENCSR199XBQ, GSE116344, GSE94872, ENCSR895JMI, ENCSR193NSH, ENCSR768DOX, ENCSR000EHW, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR807WAC, ENCSR000EHX, ENCSR620NWG, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE110061, GSE129526, ENCSR000HPG, ENCSR676MJK, ENCSR335RKQ, GSE126990, GSE50893, ENCSR748MVX, GSE64758

Cell type: MDM, RH4, GM2610, SLK, GP5d, H9-hESC, RPE, Fibroblast, Ishikawa, GM2255, IMR-90, DKO, H1-hESC, GM12878, GM2588, SK-N-SH, HUES64, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, A-549, HUVEC, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 28% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.733

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 69% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 42%, "14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBX1, SMC1A, FOXA2, EBF1, SIN3A, STAG2, FOXA1, CDK9, RELA, RAD21, NKX2-1, GATA3, TAL1, CEBPB, TEAD1, EZH2, ESR1, GRHL2, EBF3, CTCF, SMC1, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR,GET1,BRWD1,PSMG1,B3GALT5,LCA5L,MX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000183527, ENSG00000185658, ENSG00000285815, ENSG00000182093, ENSG00000157578, ENSG00000185437, ENSG00000183778, ENSG00000157601,

eachgene

Deatailed information for cohesin site CDBP00419583