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Basic information

CohesinDB ID: CDBP00419590

Locus: chr21-39725082-39727756

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, GSE72082, ENCSR000BSB, ENCSR501LQA, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE131606, GSE25021, GSE115602, GSE67783, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, ENCSR806UKK, GSE130135, ENCSR703TNG, GSE116344, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR000EHX, ENCSR767DFK, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR853VWZ, ENCSR956LGB, GSE110061, GSE129526, GSE111913, ENCSR335RKQ, GSE68388, GSE83726, GSE50893

Cell type: RH4, HuCC-T1, H9-hESC, RPE, Fibroblast, GM12890, DKO, H1-hESC, GM2588, SK-N-SH, RT-112, HUES64, MCF-7, Hela-Kyoto, HCT-116, HEK293T, Neurons-H1, A-549, HeLa, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 17% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.778

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 69% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 62%, "14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX3-FOXO1, GATA2, SOX2, DUX4, PITX3, GATA3, SETDB1, EBF3, RCOR1, KDM1A

Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 15

Related genes and loops

Related gene: ENSG00000285815, ENSG00000185437,

eachgene

Deatailed information for cohesin site CDBP00419590