- Basic information
- CohesinDB ID: CDBP00419599
- Locus: chr21-39791207-39791882
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 69%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, FOXA2, CEBPA, RUNX1T1, FOXA1, FOXF1, HOXB13, ERG, KDM1A, ZNF90, HIF1A, ZNF487, SOX11, NKX2-1, GATA3, ZNF143, TLE3, NR3C1, ESRRA, CEBPG, TEAD3, TEAD1, NR2F2, TRIM28, PIAS1, EZH2, ESR1, SETDB1, TCF12, USF1, BAF155, HNF4A, AR, SOX5, ZBTB40, GATA2, NFIL3, TEAD4, ETV5
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,SH3BGR,PCP4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
ENSG00000183036,
- Related loop:
chr21:39500000-39525000~~chr21:39775000-39800000,
chr21:39517303-39519751~~chr21:39787215-39789565,
chr21:39775000-39800000~~chr21:39900000-39925000,
chr21:39775000-39800000~~chr21:40000000-40025000,
chr21:39775000-39800000~~chr21:40075000-40100000,
chr21:39775000-39800000~~chr21:40100000-40125000,
chr21:39775000-39800000~~chr21:40125000-40150000,
chr21:39775000-39800000~~chr21:40375000-40400000,
chr21:39787215-39789565~~chr21:39910588-39912275,
chr21:39787215-39789565~~chr21:40120093-40122096,
chr21:39787253-39789571~~chr21:39855456-39856836,
chr21:39787253-39789571~~chr21:39866317-39868146,
chr21:39787253-39789571~~chr21:39910500-39912317,
chr21:39787253-39789571~~chr21:40120165-40122042,
chr21:39787296-39789560~~chr21:39910501-39912411,
chr21:39787299-39789416~~chr21:40120132-40122088,
chr21:39787325-39789860~~chr21:40119606-40122062,
chr21:39787329-39789539~~chr21:40119863-40122093,
chr21:39787332-39789505~~chr21:39910608-39912279,
chr21:39787332-39789505~~chr21:40120236-40122026,
chr21:39787336-39789600~~chr21:40119842-40122098,
chr21:39787340-39789791~~chr21:40120108-40122096,
chr21:39787452-39789550~~chr21:40119861-40122095,
chr21:39787515-39789551~~chr21:40120098-40121959,
chr21:39787550-39789577~~chr21:40119552-40122087,
chr21:39787674-39789450~~chr21:40120405-40121950,
chr21:39787674-39789450~~chr21:40385781-40387172,
chr21:39787686-39789383~~chr21:40120169-40122003,
chr21:39787697-39789341~~chr21:40120354-40121926,
chr21:39787701-39789371~~chr21:40120284-40121931,
chr21:39787705-39789776~~chr21:39910608-39912422,
chr21:39787705-39789776~~chr21:40120273-40121717,
chr21:39787706-39789391~~chr21:40120171-40121990,
chr21:39787712-39789349~~chr21:40120365-40121817,
chr21:39787716-39789399~~chr21:40120443-40121742,
chr21:39787717-39789400~~chr21:40120433-40122067,
chr21:39787718-39789326~~chr21:40120460-40121701,
chr21:39787723-39789945~~chr21:40120221-40121922,
chr21:39787733-39789380~~chr21:40120291-40121826,
chr21:39787751-39789240~~chr21:40120130-40122082,
chr21:39787773-39789310~~chr21:40120389-40121831,