- Basic information
- CohesinDB ID: CDBP00419611
- Locus: chr21-39845680-39846189
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Data sourse: ENCSR000BTU, GSE206145-NatGen2015
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Cell type: Ishikawa, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, SOX2, ZFX, SS18, HNF1A, SMAD3, SRF, MLL4, TFAP4, PAX6, RELA, YY1, ERG, ASCL1, NEUROD1, NFIC, MYC, SMARCA4, CHD7, RAD21, ARNT, OTX2, FOXM1, MAX, MED1, NR3C1, ESRRA, TRIM28, TCF7L2, TP53, ESR1, GRHL2, SETDB1, MYOD1, CTCF, TCF12, JUN, EP300, PAX3-FOXO1, REST, ZBTB7A, BRD4, PHIP, TEAD4, NCOR2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops