- Basic information
- CohesinDB ID: CDBP00419617
- Locus: chr21-39855289-39856318
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE25021, GSE76893, GSE68388, ENCSR703TNG, GSE131606, GSE115602
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Cell type: MCF-7, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYC, POU5F1, TOP2A, FOXA1, NCOR2
- Target gene symbol (double-evidenced CRMs): SH3BGR,B3GALT5,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:38850000-38875000~~chr21:39850000-39875000,
chr21:39500000-39525000~~chr21:39850000-39875000,
chr21:39600000-39625000~~chr21:39850000-39875000,
chr21:39787253-39789571~~chr21:39855456-39856836,
chr21:39850000-39875000~~chr21:40050000-40075000,
chr21:39850000-39875000~~chr21:40100000-40125000,
chr21:39850000-39875000~~chr21:40125000-40150000,
chr21:39850000-39875000~~chr21:40275000-40300000,
chr21:39850000-39875000~~chr21:40375000-40400000,