- Basic information
- CohesinDB ID: CDBP00419623
- Locus: chr21-39883106-39883442
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Data sourse: GSE116344, GSE206145-NatGen2015
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Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, EZH2phosphoT487, NKX2-2, MYCN, TOP2A, ZFX, SMAD3, FOXA1, SUZ12, CDK9, ERG, RELA, NFKB2, AHR, RUNX2, MYC, RAD21, GRHL3, HIF1A, ARNT, OTX2, MAFB, MITF, MED1, MYOG, NCOA3, CREB1, EZH2, TP53, OCA2, KLF9, GRHL2, NFKB1, MYOD1, CTCF, JUN, IRF4, BRD4, RELB, SMC3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): PCP4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops