- Basic information
- CohesinDB ID: CDBP00419626
- Locus: chr21-39888414-39888743
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Data sourse: ENCSR000BTQ, GSE72082, GSE86191, GSE105028, GSE25021
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Cell type: MCF-7, HCT-116, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 57%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, BRD1, TBL1X, BRD3, ZNF263, MYCN, ZFX, XBP1, ZBTB48, WT1, PBX2, MLL4, RELA, PBX1, ATF3, MYC, THAP1, RAD21, SP140, PROX1, NCOA3, EZH2, TP53, ESR1, SETDB1, CTCF, HSF1, NOTCH3, BRD4, MAZ, SMC3
- Target gene symbol (double-evidenced CRMs): PCP4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops