- Basic information
- CohesinDB ID: CDBP00419632
- Locus: chr21-39917286-39917553
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MYCN, KDM4C, ZFX, XBP1, ZBTB48, WT1, TET2, MYC, SP140, GRHL3, ARNT, HNRNPH1, ESR1, TP53, SETDB1, CTCF, AR, HSF1, NOTCH3, BRD4, MAZ, TFAP2C
- Target gene symbol (double-evidenced CRMs): MX1,SH3BGR,GET1-SH3BGR,PCP4,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
ENSG00000183778,
ENSG00000183036,
ENSG00000157601,
- Related loop:
chr21:39500000-39525000~~chr21:39900000-39925000,
chr21:39517315-39519547~~chr21:39910639-39912376,
chr21:39600000-39625000~~chr21:39900000-39925000,
chr21:39750000-39775000~~chr21:39900000-39925000,
chr21:39775000-39800000~~chr21:39900000-39925000,
chr21:39787253-39789571~~chr21:39910500-39912317,
chr21:39787296-39789560~~chr21:39910501-39912411,
chr21:39787705-39789776~~chr21:39910608-39912422,
chr21:39900000-39925000~~chr21:40100000-40125000,
chr21:39900000-39925000~~chr21:40375000-40400000,
chr21:39900000-39925000~~chr21:41425000-41450000,