- Basic information
- CohesinDB ID: CDBP00419638
- Locus: chr21-39938129-39938456
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 58%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, SMC1A, CHD8, TBL1X, MYCN, NKX2-2, TOP2A, EBF1, ZFX, ZBTB17, ZBTB48, WT1, FOXA1, TET2, HOXB13, ERG, YY1, KDM1A, RELA, ASCL1, ZNF341, ETS1, RUNX2, MYC, NFIC, CDK6, SP140, GRHL3, HIF1A, ARNT, MAX, CEBPB, PIAS1, STAG1, ESR1, ZNF292, SETDB1, CTCF, BAF155, AR, GATA2, POU2F3, ASH2L, BRD4, FOXP1, MAZ, SMC3, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops