- Basic information
- CohesinDB ID: CDBP00419640
- Locus: chr21-39954668-39954951
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Data sourse: ENCSR000BLD, GSE131606, GSE105028, GSE86191
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Cell type: HCT-116, H1-hESC, H9-hESC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 68%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, CHD8, BRD1, FOXA2, BRD3, NKX2-2, ZSCAN5D, SMC1A, ZFX, TOP2A, XBP1, ZNF317, WT1, NME2, HNF1A, FOXA1, FOXF1, TET2, CDK9, HOXB13, ZNF496, ERG, RELA, AHR, MYC, RAD21, SP140, GRHL3, STAT3, FOXM1, MAFB, NKX3-1, ZNF143, CDK8, MED1, TRIM28, EZH2, ESR1, OCA2, CTCF, BRD2, MAFK, SPI1, AR, IRF4, HSF1, NCOR1, NOTCH3, BRD4, SMC3, NCOR2, PDX1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops