- Basic information
- CohesinDB ID: CDBP00419647
- Locus: chr21-39986221-39986290
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
48% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"9_Het": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, LCORL, ZNF621, XBP1, FOXA1, SUZ12, ZFHX2, ZBTB7B, HDGF, BMI1, ZNF112, ZNF444, ZSCAN4, TEAD1, ZNF217, ESR1, LMO2, OCA2, CTCF, E4F1, MNT, DPF2, ZNF512B, ZNF776, PLRG1, TFAP2C, EHMT2, YBX1, POU2F2, CHD8, SRC, CTBP1, ZBTB1, ZBTB48, NONO, DDX5, NBN, ARID3A, ERG2, MYC, RFX1, FOXK2, ZNF8, IKZF1, RCOR1, ARNTL, NR3C1, CEBPB, ESRRA, CREB1, EZH2, ARHGAP35, HES1, IRF1, SSRP1, ZNF644, GATAD2B, NCOA2, SALL2, CRY1, ZFX, PCBP2, ZNF473, ERG3, TRIM22, CREBBP, ARNT, NFIB, ZNF48, SETDB1, SP1, ATF7, CTBP2, FOXP1, STAG1, MLLT1, PAX7, FOXA2, MTA3, ZNF207, ZNF662, ZBTB33, ZKSCAN1, YY1, RELA, TARDBP, NEUROD1, ZNF148, ZNF521, HIF1A, GATA3, ZNF311, NRIP1, GATA1, ZNF143, ZNF592, NCOA3, ZNF544, IRF5, PKNOX1, ZNF687, BCL6B, EGR2, AR, YAP1, HSF1, RNF2, NOTCH3, MAZ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops