- Basic information
- CohesinDB ID: CDBP00419652
- Locus: chr21-40009748-40009878
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Data sourse: GSE25021
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CBX1, POU5F1, RUNX1T1, ZFX, NME2, FOXA1, RELA, MYC, RAD21, PRDM1, GRHL3, ARNT, PRDM9, STAT3, NRIP1, MITF, PML, CREB1, ZMYM3, EZH2, ESR1, OCA2, ZNF334, SETDB1, TBX5, CTCF, JUN, BCL11A, AR, NKX2-5, MBD2, MAZ, GTF2F1, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops