- Basic information
- CohesinDB ID: CDBP00419653
- Locus: chr21-40013030-40013457
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Data sourse: GSE206145, GSE86191
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Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NCOA2, CBX1, ZSCAN5D, MYCN, POU5F1, ZFX, CTBP1, XBP1, ZBTB48, WT1, FOXA1, TET2, ERG3, SUZ12, CDK9, YY1, RELA, CREBBP, OGG1, MYC, SP140, GRHL3, ATF2, STAT3, NRIP1, PRDM14, MED1, ESRRA, EZH2, ESR1, ZIM3, SETDB1, CTCF, JUN, MNT, AR, GATA2, IRF4, FLI1, BRD4, E2F1, MAZ, AATF, ZNF766, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 278
- Number of somatic mutations (non-coding): 0
- Related genes and loops